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Novels
- Black in Time (1970)
- Brak the Barbarian (1968)
- Brak the Barbarian Versus the Mark of the Demons (1969)
- Brak the Barbarian Versus the Sorceress (1969)
- Conquest of the Planet of the Apes (1974)
- Excalibur! (1980) with Gil Kane
- Mask of Chaos (1970)
- Master of the Dark Gate (1970)
- Mention My Name in Atlantis (1972)
- Monte Cristo #99 (1970)
- On Wheels (1973)
- Secrets of Stardeep (1969)
- Six-Gun Planet (1970)
- The Asylum World (1969)
- The Hybrid (1969)
- The Last Magicians (1969)
- The Planet Wizard (1969)
- Time Gate (1972)
- Tonight We Steal the Stars (1969)
- When the Idols Walked (1978)
- When the Star Kings Die (1967)
- Witch of the Dark Gate (1972)
- Am Abgrund der Welt [German] (1976)
- Schiff der Seelen [German] (1974)
- The Best of John Jakes (1977)
- The Fortunes of Brak (1980)
- Brak the Barbarian / Mark of the Demons (2012) [O/1,3]
- On Wheels / Six-Gun Planet: Two Novels of the Future (2012) [O]
- Planet of the Apes: Omnibus 2 (2017) [O/3N] with David Gerrold and W. T. Quick
- Secrets of Stardeep / Time Gate (1982) [O]
- The Star Virus / Mask of Chaos (1970) [O/2N] with Barrington J. Bayley
- Tonight We Steal the Stars / The Wagered World (1969) [O/2N] with Laurence M. Janifer and S. J. Treibich
- Witch of the Four Winds / When the Idols Walked (2012) [O/2,4]
- Bloodstar (1976) with Robert E. Howard
- Shango (2019)
- The Android Kill (2020)
- The Most Horrible Story (2021)
- "Old Spacemen Never Die!" (1951)
- A Cabbage Named Sam (1961)
- Alias Napoleon (1957)
- And the Monsters Walk (1952)
- Blizzard-Brain (1958)
- Bloodstar (1976) with Robert E. Howard
- Buggaratz (1966)
- Checkmate Morning (1953)
- Chicago Rhapsody (1991)
- Coffins to Mars (1952)
- Crack-Up (1954)
- Death Has Green Eyes (1951)
- Devils in the Walls (1963)
- Dirge for the Sane (1954)
- Doom Jungle (1952)
- Earth Can Be Fun (1953)
- Flammengesicht [German] (1976)
- Forever Is So Long (1953)
- from 'On Wheels' (excerpt) (1977)
- Frozen Hell (1952)
- Ghosts of Stone (1979)
- Ghoul's Garden (1973)
- Half Past Fear (1951)
- Here Is Thy Sting (1968)
- Hero at Work (1957)
- Hunt the Red Roe (1953)
- Idiot Command (1952)
- In the Days of King Arsgrat (1963)
- Jackrogue Second (1953)
- Love Is a Punch in the Nose (1966)
- Machine (1952)
- Merry Xmas, Post/Gute (1970)
- Miranda (1965)
- Miss Impossible (1958)
- My Brother on the Highway (1956)
- Night of the Robots (1959)
- Nine Shadows at Doomsday (1958)
- No Dark Gallows for Me (1951)
- One Race Show (1962)
- Political Machine (1961)
- Ranging (1968)
- Recidivism Preferred (1962)
- Secret of the Burning Finger (1951)
- Seedling from the Stars (1970)
- Shango (1956)
- Skin Game (1952)
- Space Opera (1952)
- Storm in a Bottle (1977)
- Stranger with Roses (1972)
- Sums (1976) with Richard E. Peck
- Survey (1954)
- The Android Kill (1952)
- The Barge of Souls (1968)
- The Beast (1952)
- The Cybernetic Kid (1956)
- The Deadly Dark Affair (1967)
- The Deadly Mission (1958)
- The Devil Spins a Sun-Dream (1957)
- The Dolls of Death Affair (1967)
- The Dreaming Trees (1950)
- The Fiends in the Bedroom (1953)
- The Fire Magicians (1952)
- The Girl in the Gem (1965)
- The Goliath Affair (1966)
- The Highest Form of Life (1961)
- The Man from Yesterday Affair (1967)
- The Man Who Wanted to Be in the Movies (1962)
- The Mirror of Wizardry (1968)
- The Moby Dick Affair (1966)
- The Most Horrible Story (1952)
- The Opener of the Crypt (1952)
- The Pillars of Chambalor (1965)
- The Protector (1962)
- The Red Telephone (1960)
- The Revenge of Edwin Mudd (1954)
- The Running Hounds (1952)
- The Running of Ladyhound (unpublished)
- The Screams of the Wergs (1963)
- The Sellers of the Dream (1963)
- The Silk of Shaitan (1965)
- The Singular Occurence at Styles (1957)
- The Strange Paintings of Felix A. Orth (1960)
- The Taint (1955)
- The Ugly Man Affair (1967)
- The Unspeakable Shrine (1968)
- The World's End Affair (1966)
- There's No Vinism Like Chauvinism (1965)
- Uncle Tom's Time Machine (unpublished)
- Underfollow (1963)
- War Drums of Mercury Lost (1953)
- Witch House (1995) with Jonathan Jakes-Schauer
- With Intent to Kill (1953)
- With Wings (1952)
- Your Number Is Up! (1950)
- Cybernetic (1950)
- Author's Introduction to the New Edition (Mention My Name in Atlantis) (1988)
- Author's Preface (Brak vs. the Sorceress) (1981)
- Author's Preface (Brak: When the Idols Walked) (1981)
- Fritz Leiber: An Appreciation (1978)
- Introduction (Stark and the Star Kings) (2005)
- Introduction (The Lake) (1982)
- Introduction: Hollywood is a Story Town (Hollywood Kills) (1993)
- Introduzione alla nuova edizione (Ricordati di Atlantide) [Italian] (1992)
- Letter (Anduril #4, July 1974) (1974)
- Letter (Fantasy Crossroads #2) (1975)
- Letter (Startling Stories, January 1950): Straight Crit (1950)
- Letter (The Alien Critic #8) (1974)
- Letter (Thrilling Wonder Stories, December 1949): Everything's Jakes (1949)
- Letter (Thrilling Wonder Stories, February 1950): Wot---No Clinkers? (1950)
- Prefatory Note (Brak the Barbarian Versus the Mark of the Demons) (1977)
- Prefatory Note (Brak the Barbarian Versus the Sorceress) (1977)
- Prefatory Note (Brak the Barbarian) (1968)
- Title List and Ms. Return Survey Results (1970)
- A Portion of the World (map) (1969)
- Interview with Writer: John Jakes (1990) by uncredited
- The John Jakes Interview (1977) by uncredited
Non-Genre Titles
Novels
- Carnival of Lust (1959)
- More Than a Tango (1973)
- Sex Spy (1961)
- Shame Isle (1964)